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DBCLS SRA:
Survey of Read Archives

What's DBCLS SRA? - DBCLS SRAって何?

DBCLS SRA is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.

DBCLS SRA は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。

Simple Lists - まずは見てみる


Search studies - まずは検索してみる


SRA#
Study#
TAXON ID

Advanced Search
Platform
Title keyword
Type




Search by statistics - 統計値から探す

The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.

実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。


updated.

Study Types




Platform

Illumina MiSeq 2733090
Illumina HiSeq 2500 1920352
Illumina HiSeq 2000 1846461
NextSeq 500 631146
Illumina HiSeq 4000 468685
HiSeq X Ten 411518
Illumina NovaSeq 6000 296939
AB 310 Genetic Analyzer 292089
454 GS FLX Titanium 186507
Illumina Genome Analyzer II 119820
NextSeq 550 85600
Illumina HiSeq 3000 84144
Ion Torrent PGM 77939
Illumina Genome Analyzer IIx 77632
Illumina HiSeq X Ten 73893
unspecified 67903
454 GS FLX 56610
Ion Torrent Proton 50783
PacBio RS II 39791
Illumina HiSeq 1500 36500
454 GS Junior 31178
Illumina MiniSeq 28593
Illumina HiSeq 1000 26943
Illumina Genome Analyzer 24784
BGISEQ-500 22875
454 GS FLX+ 21572
454 GS 20891
GridION 16652
PacBio RS 16026
MinION 14914
Sequel 12274
AB SOLiD 4 System 11633
AB 5500xl Genetic Analyzer 10317
Ion Torrent S5 7149
Illumina HiScanSQ 6650
Ion Torrent S5 XL 5340
Complete Genomics 5088
Ion S5 XL 4454
Helicos HeliScope 4093
AB 3730xL Genetic Analyzer 3854
Illumina iSeq 100 3607
AB 5500 Genetic Analyzer 2943
Ion S5 2916
AB SOLiD System 3.0 2751
HiSeq X Five 2548
AB 3730 Genetic Analyzer 1795
AB SOLiD System 1055
454 GS 20 1052
AB 3500 Genetic Analyzer 1016
Sequel II 966
PromethION 719
AB SOLiD System 2.0 512
AB SOLiD 3 Plus System 405
AB 5500xl-W Genetic Analysis System 370
AB 3500xL Genetic Analyzer 313
AB 3130 Genetic Analyzer 218
AB 3130xL Genetic Analyzer 166
AB SOLiD 4hq System 153
DNBSEQ-G400 84
DNBSEQ-G50 40
Illumina NextSeq 500 10
454 GS FLX 10
Illumina NextSeq 550 3
AB SOLiD PI System 3
Illumina Genome Analyzer IIx 2
Illumina MiSeq 1
Illumina MiSeq 1
BGISEQ-50 1
Total 9876342
(experiments)

→ Graph of data growth



Species of samples (top 15)

Total 0
(studies)
Total 0
(experiments)


Search by species (incl. subordinate taxa)


Search by publications - 文献から探す

Publications referring to NGS data



Search by diseases - 疾患から眺める

Links

  • Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
  • Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
  • DBCLS SRA Metadata Search
  • Reference:
    Nakazato T., Ohta T., Bono H.,
    Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive.
    PLoS ONE 8(10): e77910 (2013). doi:10.1371/journal.pone.0077910 [Full Text]