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DBCLS SRA:
Survey of Read Archives

What's DBCLS SRA? - DBCLS SRAって何?

DBCLS SRA is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.

DBCLS SRA は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。

Simple Lists - まずは見てみる


Search studies - まずは検索してみる


SRA#
Study#
TAXON ID

Advanced Search
Platform
Title keyword
Type




Search by statistics - 統計値から探す

The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.

実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。


updated.

Study Types




Platform

Illumina HiSeq 2500 68792
Illumina HiSeq 2000 61545
Illumina MiSeq 42899
Illumina NovaSeq 6000 30007
NextSeq 500 21542
Illumina HiSeq 4000 14412
AB 310 Genetic Analyzer 9617
HiSeq X Ten 8520
454 GS FLX Titanium 7532
Illumina Genome Analyzer II 6870
Illumina Genome Analyzer IIx 5169
PacBio RS II 3816
454 GS FLX 3538
Ion Torrent PGM 2981
Illumina HiSeq 3000 2869
Illumina Genome Analyzer 2827
Sequel 2247
MinION 2134
Illumina HiSeq 1500 2037
NextSeq 550 1956
BGISEQ-500 1898
PacBio RS 1745
Illumina HiSeq 1000 1534
Ion Torrent Proton 1277
454 GS Junior 985
454 GS FLX+ 982
Illumina HiSeq X Ten 979
Illumina MiniSeq 927
unspecified 579
AB SOLiD 4 System 517
GridION 466
Illumina HiScanSQ 448
AB SOLiD System 3.0 416
454 GS 20 395
454 GS 373
AB 5500xl Genetic Analyzer 366
Sequel II 349
Ion Torrent S5 XL 269
PromethION 253
Ion Torrent S5 222
AB 5500 Genetic Analyzer 212
HiSeq X Five 197
Illumina iSeq 100 160
Ion S5 XL 140
AB 3730xL Genetic Analyzer 130
Complete Genomics 128
Ion S5 100
AB SOLiD System 99
Helicos HeliScope 91
AB SOLiD System 2.0 91
DNBSEQ-G400 75
AB SOLiD 3 Plus System 68
AB 3730 Genetic Analyzer 53
AB 5500xl-W Genetic Analysis System 30
AB 3500 Genetic Analyzer 19
AB 3130xL Genetic Analyzer 19
AB 3130 Genetic Analyzer 17
DNBSEQ-T7 15
DNBSEQ-G50 11
AB 3500xL Genetic Analyzer 11
NextSeq 2000 8
AB SOLiD 4hq System 6
AB SOLiD PI System 3
NextSeq 1000 2
MGISEQ-2000RS 1
Illumina NextSeq 550 1
Illumina NextSeq 500 1
Illumina MiSeq 1
Illumina MiSeq 1
Illumina Genome Analyzer IIx 1
BGISEQ-50 1
454 GS FLX 1
Total 317983
(studies)
Illumina MiSeq 3421101
Illumina HiSeq 2500 2268352
Illumina HiSeq 2000 1962805
Illumina NovaSeq 6000 833700
NextSeq 500 812276
Illumina HiSeq 4000 657024
HiSeq X Ten 531132
AB 310 Genetic Analyzer 329032
454 GS FLX Titanium 189276
NextSeq 550 181421
Illumina HiSeq 3000 124420
Illumina Genome Analyzer II 120480
unspecified 92980
Ion Torrent PGM 86801
GridION 81376
Illumina Genome Analyzer IIx 79136
Illumina HiSeq X Ten 74333
454 GS FLX 59168
Ion Torrent Proton 57683
PacBio RS II 43340
Illumina HiSeq 1500 42829
Illumina MiniSeq 41994
MinION 38277
BGISEQ-500 34555
454 GS Junior 31369
Illumina HiSeq 1000 30226
454 GS 28336
Illumina Genome Analyzer 25575
454 GS FLX+ 22235
Sequel 17329
PacBio RS 16610
Ion Torrent S5 12546
AB SOLiD 4 System 11715
AB 5500xl Genetic Analyzer 10367
Ion Torrent S5 XL 10010
Illumina iSeq 100 8473
Illumina HiScanSQ 7821
DNBSEQ-G400 6120
Complete Genomics 5268
HiSeq X Five 4689
Ion S5 XL 4475
AB 3730xL Genetic Analyzer 4403
Helicos HeliScope 4344
AB 5500 Genetic Analyzer 3861
Ion S5 2936
AB SOLiD System 3.0 2768
PromethION 2741
Sequel II 2422
AB 3500xL Genetic Analyzer 2109
NextSeq 2000 2099
AB 3500 Genetic Analyzer 2019
AB 3730 Genetic Analyzer 1853
454 GS 20 1080
AB 3130 Genetic Analyzer 1075
AB SOLiD System 1058
AB 3130xL Genetic Analyzer 940
AB SOLiD System 2.0 512
AB 5500xl-W Genetic Analysis System 426
AB SOLiD 3 Plus System 407
DNBSEQ-G50 287
AB SOLiD 4hq System 153
DNBSEQ-T7 101
NextSeq 1000 33
Illumina NextSeq 500 10
454 GS FLX 10
MGISEQ-2000RS 4
Illumina NextSeq 550 3
AB SOLiD PI System 3
Illumina Genome Analyzer IIx 2
Illumina MiSeq 1
Illumina MiSeq 1
BGISEQ-50 1
Total 12454317
(experiments)

→ Graph of data growth



Species of samples (top 15)

Total 0
(studies)
Total 0
(experiments)


Search by species (incl. subordinate taxa)


Search by publications - 文献から探す

Publications referring to NGS data



Search by diseases - 疾患から眺める

Links

  • Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
  • Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
  • DBCLS SRA Metadata Search
  • Reference:
    Nakazato T., Ohta T., Bono H.,
    Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive.
    PLoS ONE 8(10): e77910 (2013). doi:10.1371/journal.pone.0077910 [Full Text]