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DBCLS SRA:
Survey of Read Archives

What's DBCLS SRA? - DBCLS SRAって何?

DBCLS SRA is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.

DBCLS SRA は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。

Simple Lists - まずは見てみる


Search studies - まずは検索してみる


SRA#
Study#
TAXON ID

Advanced Search
Platform
Title keyword
Type




Search by statistics - 統計値から探す

The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.

実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。


updated.

Study Types




Platform

Illumina MiSeq 1870519
Illumina HiSeq 2000 1693335
Illumina HiSeq 2500 1520818
NextSeq 500 413161
Illumina HiSeq 4000 269910
HiSeq X Ten 238405
454 GS FLX Titanium 181636
Illumina Genome Analyzer II 117178
Illumina Genome Analyzer IIx 72380
Ion Torrent PGM 61768
454 GS FLX 56057
Illumina HiSeq 3000 49818
Illumina NovaSeq 6000 47321
Illumina HiSeq X Ten 45099
unspecified 42261
NextSeq 550 38889
PacBio RS II 31620
454 GS Junior 30618
Illumina HiSeq 1500 27801
Ion Torrent Proton 23689
AB 310 Genetic Analyzer 22914
Illumina Genome Analyzer 22896
Illumina HiSeq 1000 22357
454 GS FLX+ 20707
454 GS 16576
PacBio RS 15080
Illumina MiniSeq 12397
AB SOLiD 4 System 11464
BGISEQ-500 9649
AB 5500xl Genetic Analyzer 7941
MinION 6728
Illumina HiScanSQ 5831
Sequel 5730
Complete Genomics 4945
Helicos HeliScope 4086
Ion S5 XL 3509
AB 3730xL Genetic Analyzer 3126
AB 5500 Genetic Analyzer 2802
AB SOLiD System 3.0 2700
GridION 2249
Ion S5 2153
454 GS 20 1046
AB SOLiD System 1042
HiSeq X Five 915
AB 3730 Genetic Analyzer 894
AB SOLiD System 2.0 511
AB SOLiD 3 Plus System 394
AB 5500xl-W Genetic Analysis System 370
AB 3500 Genetic Analyzer 307
Ion Torrent S5 XL 304
Ion Torrent S5 218
PromethION 172
AB 3130xL Genetic Analyzer 166
AB SOLiD 4hq System 153
AB 3130 Genetic Analyzer 150
Illumina iSeq 100 130
Sequel II 52
Illumina NextSeq 500 34
AB 3500xL Genetic Analyzer 22
454 GS FLX 10
Illumina NextSeq 550 3
AB SOLiD PI System 3
Illumina Genome Analyzer IIx 2
Illumina MiSeq 1
Total 7045022
(experiments)

→ Graph of data growth



Species of samples (top 15)

Total 0
(studies)
Total 0
(experiments)


Search by species (incl. subordinate taxa)


Search by publications - 文献から探す

Publications referring to NGS data



Search by diseases - 疾患から眺める

Links

  • Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
  • Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
  • DBCLS SRA Metadata Search
  • Reference:
    Nakazato T., Ohta T., Bono H.,
    Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive.
    PLoS ONE 8(10): e77910 (2013). doi:10.1371/journal.pone.0077910 [Full Text]