DBCLS SRA:
Survey of Read Archives
What's DBCLS SRA? - DBCLS SRAって何?
DBCLS SRA is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.
DBCLS SRA は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。
Simple Lists - まずは見てみる
Search studies - まずは検索してみる
Search by statistics - 統計値から探す
The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.
実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。
updated.
Study Types
Other | 157111 |
Whole Genome Sequencing | 77678 |
Transcriptome Analysis | 46904 |
Metagenomics | 41617 |
Population Genomics | 822 |
Epigenetics | 730 |
Exome Sequencing | 313 |
Cancer Genomics | 229 |
Transcriptome Sequencing | 174 |
Pooled Clone Sequencing | 35 |
Synthetic Genomics | 11 |
Whole Genome Sequencing | 1 |
Total | 325625 (studies) |
Platform
→ Graph of data growth
Species of samples (top 15)
Total | 0 (studies) |
Total | 0 (experiments) |
→ Search by species (incl. subordinate taxa)
Search by publications - 文献から探す
→ Publications referring to NGS data
Search by diseases - 疾患から眺める
Links
- Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
- Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
- DBCLS SRA Metadata Search
- Reference:
Nakazato T., Ohta T., Bono H.,
Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive.
PLoS ONE 8(10): e77910 (2013). doi:10.1371/journal.pone.0077910 [Full Text]