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DBCLS SRA:
Survey of Read Archives

What's DBCLS SRA? - DBCLS SRAって何?

DBCLS SRA is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.

DBCLS SRA は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。

Simple Lists - まずは見てみる


Search studies - まずは検索してみる


SRA#
Study#
TAXON ID

Advanced Search
Platform
Title keyword
Type




Search by statistics - 統計値から探す

The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.

実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。


updated.

Study Types




Platform

Illumina MiSeq 2418067
Illumina HiSeq 2000 1797624
Illumina HiSeq 2500 1768493
NextSeq 500 541993
Illumina HiSeq 4000 373581
HiSeq X Ten 356488
AB 310 Genetic Analyzer 292088
454 GS FLX Titanium 184733
Illumina Genome Analyzer II 118511
Illumina NovaSeq 6000 118229
Illumina Genome Analyzer IIx 74509
Ion Torrent PGM 72136
Illumina HiSeq 3000 67554
unspecified 66092
Illumina HiSeq X Ten 65002
NextSeq 550 61247
454 GS FLX 56323
PacBio RS II 37447
Ion Torrent Proton 36672
Illumina HiSeq 1500 33280
454 GS Junior 30972
Illumina HiSeq 1000 24759
Illumina Genome Analyzer 23980
Illumina MiniSeq 22742
454 GS FLX+ 21274
454 GS 19507
BGISEQ-500 18130
PacBio RS 15795
AB SOLiD 4 System 11612
MinION 10429
Sequel 10215
AB 5500xl Genetic Analyzer 8303
GridION 6690
Illumina HiScanSQ 6135
Complete Genomics 5080
Ion S5 XL 4152
Helicos HeliScope 4089
AB 3730xL Genetic Analyzer 3778
AB 5500 Genetic Analyzer 2920
AB SOLiD System 3.0 2705
Ion S5 2599
HiSeq X Five 2272
Ion Torrent S5 XL 2189
AB 3730 Genetic Analyzer 1750
Ion Torrent S5 1271
Illumina iSeq 100 1264
AB SOLiD System 1055
454 GS 20 1052
AB 3500 Genetic Analyzer 973
AB SOLiD System 2.0 512
PromethION 402
AB SOLiD 3 Plus System 401
AB 5500xl-W Genetic Analysis System 370
AB 3500xL Genetic Analyzer 312
Sequel II 279
AB 3130 Genetic Analyzer 214
AB 3130xL Genetic Analyzer 166
AB SOLiD 4hq System 153
Illumina NextSeq 500 11
DNBSEQ-G400 10
454 GS FLX 10
DNBSEQ-G50 6
Illumina NextSeq 550 3
AB SOLiD PI System 3
Illumina Genome Analyzer IIx 2
Illumina MiSeq 1
BGISEQ-50 1
Total 8810617
(experiments)

→ Graph of data growth



Species of samples (top 15)

Total 0
(studies)
Total 0
(experiments)


Search by species (incl. subordinate taxa)


Search by publications - 文献から探す

Publications referring to NGS data



Search by diseases - 疾患から眺める

Links

  • Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
  • Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
  • DBCLS SRA Metadata Search
  • Reference:
    Nakazato T., Ohta T., Bono H.,
    Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive.
    PLoS ONE 8(10): e77910 (2013). doi:10.1371/journal.pone.0077910 [Full Text]